Faculty & Staff Directory

Jim Rogers, PhD

Jimmy Rogers


Fall 2018 Office Hours
Monday - Thursday: 12pm-1pm; 2:05pm-2:25pm,
or by appointment.
Education
Ph.D., Albert Einstein College of Medicine, 1993
M.A., University of Nebraska at Omaha, 2002
B.S., Creighton University, 1985
Research Interests
Mathematical Biology
Selected Publications

24. Kochi, N., Helikar, T., Allen, L., Rogers, J.A., Wang, Z. and Matache, M.T., Sensitivity analysis of biological Boolean networks using information fusion based on nonadditive set functions. BMC Syst Biol. 8:92 (2014).

23. Helikar, T., Kowal, B. and Rogers, J.A., A cell simulator platform: the cell collective. Clin Pharmacol Ther. 93:393 (2013).

22. Helikar, T., Kochi, N., Kowal, B., Dimri, M., Naramura, M., Raja, S.M., Band, V., Band, H. and Rogers, J.A., A comprehensive, multi-scale dynamical model of ErbB receptor signal transduction in human mammary epithelial cells. PLoS One. 8:e61757 (2013). 

21. Madrahimov, A., Helikar, T., Kowal, B., Lu, G. and Rogers, J.A.,  Dynamics of Influenza Virus and Human Host Interactions During Infection and Replication Cycle. Bull Math Biol. 75:988-1011 (2013).

20. Helikar, T., Kowal, B., Madrahimov, A., Shrestha, M., Pedersen, J., Limbu, K., Thapa, I., Rowley, T., Satalkar, R., Kochi, N., Konvalina, J. and Rogers, J.A., Bio-logic builder: a non-technical tool for building dynamical, qualitative models. PLoS One. 7:e46417 (2012).

19. Helikar, T., Kowal, B., McClenathan, S., Bruckner, M., Rowley, T., Madrahimov, A., Wicks, B., Shrestha, M., Limbu, K. and Rogers, J.A.,  The Cell Collective: toward an open and collaborative approach to systems biology. BMC Syst. Biology. 6:96 (2012).

18. Helikar, T. and Rogers, J.A., ChemChains: a platform for simulation and analysis of biochemical networks aimed to laboratory scientists BMC Systems Biology, 3:58 (2009).

17. Helikar, T., Konvalina, J., Heidel, J. and Rogers, J.A., Emergent Decision-Making in Biological Signal Transduction Networks. Proc. Natl. Acad. Sci., USA. 105:1913 (2008).

16. Konvalina, J., Konifsakhar, I., Heidel, J. and Rogers, J.A., Combinatorial fractal geometry with a biological application. Fractals 14-133 (2006).

15. Konvalina, J., Heidel, J. and Rogers, J.A., A Mean Paradox, Amer. Math Monthly, 113:166 (2005).

14. Farrow, C., Heidel, J., Maloney, J. and Rogers, J.A., Scalar equations for synchronous Boolean networks with biological applications. IEEE Trans. Neural Networks 15:348 (2003).

13. Heidel, J., Maloney, J., Farrow, C. and Rogers, J.A., Finding cycles in synchronous Boolean networks with applications to biochemical systems. Inter. J. Bifurcation and Chaos 13:535 (2003).

12. Rogers, J.A., Cheng, H.Y. and Smithgall T.E., Src SH2 domain substitution modulates the kinase and transforming activities of Fes protein-tyrosine kinase. Cell Growth & Diff. 11:581 (2000).

11. Chacko, D.M., Rogers, J.A., Turner, J.E. and Ahmad, I., Survival of cultured retinal progenitors transplanted in the subretinal space of the rat. Biochem. Biophys. Res. Commun. 268:842 (2000).

10. Cheng, H., Rogers, J.A., Durham, N.A. and Smithgall, T.E., Regulation of c-Fes tyrosine kinase and biological activities by N-terminal coiled-coil oligomerization domains. Mol. Cell Biol. 19:8335 (1999).

9. Ahmad, I., Dooley, C.M., Thoreson, W.B., Rogers, J.A. and Afiat, S., In vitro analysis of a mammalian retinal progenitor that gives rise to neurons and glia. Brain Res. 831:1 (1999).

8. Ahmad, I., Acharya, H.R., Rogers, J.A., Shibata, A., Smithgall, T.E. and Dooney, C.M., The role of NeuroD as a differentiation factor in the mammalian retina J. Mol. Neuro. 11:1 (1998).

7. Smithgall, T.E., Rogers, J.A., Peters, K.L., Briggs, S.D., Lionberger, J.M., Cheng, H., Shibata, A., Scholtz, B., Schreiner, S. and Dunham, N., The c-Fes family of protein tyrosine kinases. Crit. Rev. Oncog. 9:43 (1998).

6. Nelson, K.L., Rogers, J.A., Bowman, T.L., Jove, R. and Smithgall, T.E., Activation of STAT-3 by the c-Fes protein-tyrosine kinase. J. Biol. Chem. 273:7072 (1998).

5. Rogers, J.A., Read, R.D., Peters, K.L. and Smithgall, T.E., Autophosphorylation of the Fes tyrosine kinase. J. Biol. Chem. 271:17519 (1996).

4. Rogers, J.A. and Berman, J.W., Tumor necrosis factor-alpha enriches for stem cells in long-term bone marrow cultures. J. Immunol. 153:4694 (1994).

3. Rogers, J.A. and Berman, J.W., A tumor necrosis factor responsive primitive hematopoietic stem cell is associated with the stromal layer of mouse long-term bone marrow cultures. Proc. Natl. Acad. Sci. USA. 90:5777 (1993).

2. Yasuda, N., Lai, P.K., Rogers, J.A. and Purtilo, D.T., Defective control of Epstein-Barr virus-infected B cell growth in patients with X-linked lymphoproliferative disease. Clin. Exp. Immunol. 83:10 (1991).

1. Thiele, G.M., Rogers, J.A., Collins, M., Yasuda, N., Smith, D. McDonald, T.L., An enzyme-linked immunosorbent assay for the detection of antitetanus toxoid antibody using aluminum-absorbed coating antigen. J. Clin. Lab. Anal. 4:126 (1990).