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Department of Mathematics
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Jim Rogers

Selected Publications

18. Helikar, T. and Rogers, J.A., ChemChains: a platform for simulation and analysis of biochemical networks aimed to laboratory scientists BMC Systems Biology, 3:58 (2009).

17. Helikar, T., Konvalina, J., Heidel, J. and Rogers, J.A., Emergent Decision-Making in Biological Signal Transduction Networks. Proc. Natl. Acad. Sci., USA. 105:1913 (2008).

16. Konvalina, J., Konifsakhar, I., Heidel, J. and Rogers, J.A., Combinatorial fractal geometry with a biological application. Fractals 14-133 (2006).

15. Konvalina, J., Heidel, J. and Rogers, J.A., A Mean Paradox, Amer. Math Monthly, 113:166 (2005).

14. Farrow, C., Heidel, J., Maloney, J. and Rogers, J.A., Scalar equations for synchronous Boolean networks with biological applications. IEEE Trans. Neural Networks 15:348 (2003).

13. Heidel, J., Maloney, J., Farrow, C. and Rogers, J.A., Finding cycles in synchronous Boolean networks with applications to biochemical systems. Inter. J. Bifurcation and Chaos 13:535 (2003).

12. Rogers, J.A., Cheng, H.Y. and Smithgall T.E., Src SH2 domain substitution modulates the kinase and transforming activities of Fes protein-tyrosine kinase. Cell Growth & Diff. 11:581 (2000).

11. Chacko, D.M., Rogers, J.A., Turner, J.E. and Ahmad, I., Survival of cultured retinal progenitors transplanted in the subretinal space of the rat. Biochem. Biophys. Res. Commun. 268:842 (2000).

10. Cheng, H., Rogers, J.A., Durham, N.A. and Smithgall, T.E., Regulation of c-Fes tyrosine kinase and biological activities by N-terminal coiled-coil oligomerization domains. Mol. Cell Biol. 19:8335 (1999).

9. Ahmad, I., Dooley, C.M., Thoreson, W.B., Rogers, J.A. and Afiat, S., In vitro analysis of a mammalian retinal progenitor that gives rise to neurons and glia. Brain Res. 831:1 (1999).

8. Ahmad, I., Acharya, H.R., Rogers, J.A., Shibata, A., Smithgall, T.E. and Dooney, C.M., The role of NeuroD as a differentiation factor in the mammalian retina J. Mol. Neuro. 11:1 (1998).

7. Smithgall, T.E., Rogers, J.A., Peters, K.L., Briggs, S.D., Lionberger, J.M., Cheng, H., Shibata, A., Scholtz, B., Schreiner, S. and Dunham, N., The c-Fes family of protein tyrosine kinases. Crit. Rev. Oncog. 9:43 (1998).

6. Nelson, K.L., Rogers, J.A., Bowman, T.L., Jove, R. and Smithgall, T.E., Activation of STAT-3 by the c-Fes protein-tyrosine kinase. J. Biol. Chem. 273:7072 (1998).

5. Rogers, J.A., Read, R.D., Peters, K.L. and Smithgall, T.E., Autophosphorylation of the Fes tyrosine kinase. J. Biol. Chem. 271:17519 (1996).

4. Rogers, J.A. and Berman, J.W., Tumor necrosis factor-alpha enriches for stem cells in long-term bone marrow cultures. J. Immunol. 153:4694 (1994).

3. Rogers, J.A. and Berman, J.W., A tumor necrosis factor responsive primitive hematopoietic stem cell is associated with the stromal layer of mouse long-term bone marrow cultures. Proc. Natl. Acad. Sci. USA. 90:5777 (1993).

2. Yasuda, N., Lai, P.K., Rogers, J.A. and Purtilo, D.T., Defective control of Epstein-Barr virus-infected B cell growth in patients with X-linked lymphoproliferative disease. Clin. Exp. Immunol. 83:10 (1991).

1. Thiele, G.M., Rogers, J.A., Collins, M., Yasuda, N., Smith, D. McDonald, T.L., An enzyme-linked immunosorbent assay for the detection of antitetanus toxoid antibody using aluminum-absorbed coating antigen. J. Clin. Lab. Anal. 4:126 (1990).